Package index • isoreader2

Read isofiles

These functions allows reading of stable isotope data files/archives

ir_examples_folder() ir_copy_examples(): Bundled example files
ir_find_isofiles() ir_find_continuous_flow() ir_find_dual_inlet() ir_find_scans(): Find isodat files
ir_read_isofiles(): Read isotope data files
c(<ir_isofiles>): Combine isofiles
ir_check_isoextract() ir_check_isosolfs(): Check for the isoextract executables
ir_extract_isofiles() ir_get_isoextract_version(): run the isoextract executable on a vector of file paths this is usually not called directly
ir_get_supported_file_types(): Get supported file types
ir_get_problems() ir_show_problems(): Retrieve parsing problems

These functions combine the data from multiple isofiles for combined use

ir_aggregate_isofiles(): Aggregate data from isofiles
c(<ir_aggregated_data>): Combine aggregated isofile data
ir_calculate_ratios(): Calculate isotope ratios
ir_convert_intensity(): Convert intensity between units
ir_start_aggregator() ir_add_to_aggregator() ir_register_aggregator() ir_get_aggregator(): Dynamic data aggregator
ir_get_data() ir_get_metadata() ir_get_resistors() ir_get_traces() ir_get_cycles() ir_get_scans() ir_get_vendor_data_table(): Get data frame from aggregated data

These functions filter, modify, or extend the metadata of aggregated isofiles.

ir_filter_metadata() ir_mutate_metadata() ir_join_metadata(): Filter, mutate, or join the metadata of isofiles
ir_filter_for_continuous_flow() ir_filter_for_dual_inlet() ir_filter_for_scans(): Filter isofiles by measurement type

These functions plot aggregated isofiles data.

ir_default_theme(): Default isoreader2 plotting theme
ir_plot_scans(): Plot scan data
ir_plot_continuous_flow(): Plot continuous flow data
ir_plot_dual_inlet(): Plot dual inlet cycle data
ir_generate_traces_tibble() ir_generate_cycles_tibble() ir_generate_scans_tibble(): Generate the tibble used by the plotting functions
auto(): Automatic / default behavior

These functions save aggregated isofiles data to disk.

ir_export_to_excel(): Export data to Excel
ir_save_aggregated_data() ir_load_aggregated_data(): Save and load aggregated isofile data
ir_save_isofiles() ir_load_isofiles(): Save and load isofiles

These functions are available to simplify or customize the data analysis.

isoreader2 isoreader2-package: isoreader2: Read Stable Isotope Data Files
ir_options() ir_get_options() ir_get_option(): Package options