Read isotope data files

Read isotope data files

Usage

ir_read_isofiles(
  file_paths,
  show_progress = is_interactive(),
  show_problems = TRUE,
  reextract = FALSE
)

Arguments

file_paths

paths to the isodat file(s), single value or vector of paths. Use ir_find_isofiles() to get files in a folder.

show_progress

whether to show a progress bar, by default always enabled when running interactively e.g. inside Positron or RStudio (and disabled in a notebook), turn off with show_progress = FALSE

show_problems

whether to show problems encountered along the way (rather than just keeping track of them with ir_get_problems()). Set to show_problems = FALSE to turn off the live printout. Either way, all encountered problems can be retrieved with running ir_get_problems() for the returned list

reextract

whether to re-extract files (uses isoextract to read files from scratch); if FALSE (default) only files that have not been extracted yet (or whose previous extraction is out of date) are extracted. Use ir_extract_isofiles() directly for finer control over extraction (e.g. pretty_json or dry_run).

Value

a tibble data frame (an ir_isofiles object) where each row holds the file path and nested tibbles of datasets extracted from the isodat files. Use ir_aggregate_isofiles() to aggregate data safely across files. Multiple such collections can be combined into one with a simple c() (see c.ir_isofiles()).

See also

c.ir_isofiles() to combine collections of isofiles